3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08861

Details:

PFam ID : PF08861

PFam Domain Description : Domain of unknown function DUF1828

Number of Sequence in 50% Dataset : 57

Number of Sequence in Full Dataset : 99

Average sequence length: 87.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08861	F2M2M9_LACAM_1_63	89.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08861	B6ISM6_RHOCS_35_130	100

Sequence based PCA Plot of the family - PF08861 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=37 Length=8
Motif2 Start=28 Length=8
Motif3 Start=2 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay