3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08860

Details:

PFam ID : PF08860

PFam Domain Description : Domain of unknown function (DUF1827)

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 42

Average sequence length: 90.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08860	A5GCK9_GEOUR_46_162	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08860	C9BFZ4_ENTFC_1_100	100

Sequence based PCA Plot of the family - PF08860 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay