3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08859

Details:

PFam ID : PF08859

PFam Domain Description : DGC domain

Number of Sequence in 50% Dataset : 32

Number of Sequence in Full Dataset : 103

Average sequence length: 108.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08859	A5GCK9_GEOUR_46_162	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08859	Q3A9B9_CARHZ_7_128	100

Sequence based PCA Plot of the family - PF08859 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=60 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay