3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08858

Details:

PFam ID : PF08858

PFam Domain Description : IDEAL domain

Number of Sequence in 50% Dataset : 27

Number of Sequence in Full Dataset : 145

Average sequence length: 36.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08858	A6CQ20_9BACI_45_81	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08858	Q9K8P3_BACHD_36_72	93.0

Sequence based PCA Plot of the family - PF08858 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=28 Length=8
Motif2 Start=1 Length=8
Motif3 Start=19 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay