3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08854

Details:

PFam ID : PF08854

PFam Domain Description : Domain of unknown function (DUF1824)

Number of Sequence in 50% Dataset : 15

Number of Sequence in Full Dataset : 54

Average sequence length: 121.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08854	A2C1E9_PROM1_8_132	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08854	A2C1E9_PROM1_8_132	100

Sequence based PCA Plot of the family - PF08854 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=99 Length=8
Motif2 Start=37 Length=8
Motif3 Start=76 Length=8
Motif4 Start=116 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay