3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08853

Details:

PFam ID : PF08853

PFam Domain Description : Domain of unknown function (DUF1823)

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 52

Average sequence length: 115.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08853	D4TSG0_9NOST_1_127	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08853	D7G842_ECTSI_100_229	100

Sequence based PCA Plot of the family - PF08853 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=100 Length=8
Motif3 Start=48 Length=11
Motif4 Start=115 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay