3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08848

Details:

PFam ID : PF08848

PFam Domain Description : Domain of unknown function (DUF1818)

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 48

Average sequence length: 112.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08848	Q7V055_PROMP_2_119	83.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08848	Q7V055_PROMP_2_119	100

Sequence based PCA Plot of the family - PF08848 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=24 Length=11
Motif2 Start=15 Length=8
Motif3 Start=70 Length=8
Motif4 Start=6 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay