3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08847

Details:

PFam ID : PF08847

PFam Domain Description : Domain of unknown function (DUF1817)

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 56

Average sequence length: 147.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08847	B9IML8_POPTR_10_113	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08847	Q0I8P0_SYNS3_11_160	100

Sequence based PCA Plot of the family - PF08847 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=7 Length=18
Motif2 Start=69 Length=8
Motif3 Start=46 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay