3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08845

Details:

PFam ID : PF08845

PFam Domain Description : Toxin SymE, type I toxin-antitoxin system

Number of Sequence in 50% Dataset : 29

Number of Sequence in Full Dataset : 180

Average sequence length: 50.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08845	B4T7N0_SALHS_8_33	21.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08845	Q140X2_BURXL_6_72	99.4

Sequence based PCA Plot of the family - PF08845 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay