3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08843

Details:

PFam ID : PF08843

PFam Domain Description : Nucleotidyl transferase of unknown function (DUF1814)

Number of Sequence in 50% Dataset : 512

Number of Sequence in Full Dataset : 1112

Average sequence length: 221.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08843	A4SDS3_PROVI_29_176	92.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08843	A5FTN4_ACICJ_24_269	99.5

Sequence based PCA Plot of the family - PF08843 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=133 Length=8
Motif3 Start=15 Length=8
Motif4 Start=31 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay