3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08842

Details:

PFam ID : PF08842

PFam Domain Description : Fimbrillin-A associated anchor proteins Mfa1 and Mfa2

Number of Sequence in 50% Dataset : 98

Number of Sequence in Full Dataset : 164

Average sequence length: 271.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08842	E4VPZ5_BACFR_25_299	91.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08842	D4WAS2_BACOV_28_303	97.5

Sequence based PCA Plot of the family - PF08842 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=108 Length=8
Motif4 Start=69 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay