3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08841

Details:

PFam ID : PF08841

PFam Domain Description : Diol dehydratase reactivase ATPase-like domain

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 57

Average sequence length: 297.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08841	E7UXE0_SALTY_1_72	28.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08841	O85191_CLOPA_274_602	100

Sequence based PCA Plot of the family - PF08841 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=98 Length=8
Motif3 Start=30 Length=8
Motif4 Start=15 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay