3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08831

Details:

PFam ID : PF08831

PFam Domain Description : Class II MHC-associated invariant chain trimerisation domain

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 27

Average sequence length: 66.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08831	C6CXW6_PAESJ_27_102	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08831	Q6PB08_XENLA_126_197	100

Sequence based PCA Plot of the family - PF08831 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=43 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay