3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08825

Details:

PFam ID : PF08825

PFam Domain Description : E2 binding domain

Number of Sequence in 50% Dataset : 28

Number of Sequence in Full Dataset : 119

Average sequence length: 84.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08825	B3RIR6_TRIAD_443_599	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08825	C1E553_MICSR_356_446	100

Sequence based PCA Plot of the family - PF08825 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=42 Length=8
Motif2 Start=33 Length=8
Motif3 Start=24 Length=8
Motif4 Start=8 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay