3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08821

Details:

PFam ID : PF08821

PFam Domain Description : CGGC domain

Number of Sequence in 50% Dataset : 32

Number of Sequence in Full Dataset : 105

Average sequence length: 106.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08821	D4KFK3_9FIRM_3_118	96.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08821	D4KFK3_9FIRM_3_118	100

Sequence based PCA Plot of the family - PF08821 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=108 Length=8
Motif2 Start=1 Length=21
Motif3 Start=44 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay