3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08818

Details:

PFam ID : PF08818

PFam Domain Description : Domain of unknown function (DU1801)

Number of Sequence in 50% Dataset : 141

Number of Sequence in Full Dataset : 720

Average sequence length: 99.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08818	D5YYF4_MYCTU_1_55	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08818	Q8CR78_STAES_18_92	98.6

Sequence based PCA Plot of the family - PF08818 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=18
Motif2 Start=50 Length=11
Motif3 Start=21 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay