3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08817 Details: PFam ID : PF08817 PFam Domain Description : WXG100 protein secretion system (Wss), protein YukD Number of Sequence in 50% Dataset : 51 Number of Sequence in Full Dataset : 180 Average sequence length: 78.4 Pairwise Identity of Sequence in 50% Dataset : 31.3 FASSM Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF08817D5YYF4_MYCTU_1_5534 HMMER Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF08817Q5Z1J6_NOCFA_22_10799.4 Sequence based PCA Plot of the family - PF08817 : BRP of Green color is by FASSM and of Red color is by HMMER PSIMOT-Motifs Extracted using PSIMOT:There are 3 motifsMotif1 Start=1 Length=8Motif2 Start=12 Length=18Motif3 Start=68 Length=8 Download PSSM/HMM Models/Alignment:Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay
PFam ID : PF08817
PFam Domain Description : WXG100 protein secretion system (Wss), protein YukD
Number of Sequence in 50% Dataset : 51
Number of Sequence in Full Dataset : 180
Average sequence length: 78.4
Pairwise Identity of Sequence in 50% Dataset : 31.3
BRP of Green color is by FASSM and of Red color is by HMMER