Home Browse Search Download Help Group

3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08817
Details:

PFam ID : PF08817

PFam Domain Description : WXG100 protein secretion system (Wss), protein YukD

Number of Sequence in 50% Dataset : 51

Number of Sequence in Full Dataset : 180

Average sequence length: 78.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF08817D5YYF4_MYCTU_1_5534
HMMER Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF08817Q5Z1J6_NOCFA_22_10799.4
Sequence based PCA Plot of the family - PF08817 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=12 Length=18
Motif3 Start=68 Length=8
Download PSSM/HMM Models/Alignment:
Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay