3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08816

Details:

PFam ID : PF08816

PFam Domain Description : Inhibitor of vertebrate lysozyme (Ivy)

Number of Sequence in 50% Dataset : 19

Number of Sequence in Full Dataset : 58

Average sequence length: 111.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08816	D2BSX2_DICD5_58_157	94.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08816	E2ZZ09_PSEAE_33_151	100

Sequence based PCA Plot of the family - PF08816 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=84 Length=8
Motif4 Start=52 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay