3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08815 Details: PFam ID : PF08815 PFam Domain Description : Nuclear receptor coactivator Number of Sequence in 50% Dataset : 3 Number of Sequence in Full Dataset : 21 Average sequence length: 46.0 Pairwise Identity of Sequence in 50% Dataset : 31.3 FASSM Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF08815B9TGU4_RICCO_50_218No suitable BRS could be identified HMMER Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF08815B7ZSK8_XENLA_1061_110595 Sequence based PCA Plot of the family - PF08815 : BRP of Green color is by FASSM and of Red color is by HMMER PSIMOT-Motifs Extracted using PSIMOT:There are 4 motifsMotif1 Start=28 Length=8Motif2 Start=19 Length=8Motif3 Start=10 Length=8Motif4 Start=1 Length=8 Download PSSM/HMM Models/Alignment:Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay
PFam ID : PF08815
PFam Domain Description : Nuclear receptor coactivator
Number of Sequence in 50% Dataset : 3
Number of Sequence in Full Dataset : 21
Average sequence length: 46.0
Pairwise Identity of Sequence in 50% Dataset : 31.3
BRP of Green color is by FASSM and of Red color is by HMMER