3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08814

Details:

PFam ID : PF08814

PFam Domain Description : XisH protein

Number of Sequence in 50% Dataset : 19

Number of Sequence in Full Dataset : 97

Average sequence length: 112.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08814	B9TGU4_RICCO_50_218	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08814	D5A3S9_SPIPL_1_99	100

Sequence based PCA Plot of the family - PF08814 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=21
Motif2 Start=119 Length=8
Motif3 Start=85 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay