3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08812

Details:

PFam ID : PF08812

PFam Domain Description : YtxC-like family

Number of Sequence in 50% Dataset : 51

Number of Sequence in Full Dataset : 89

Average sequence length: 207.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08812	E3EKA8_PAEPS_37_255	96

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08812	A6CR69_9BACI_28_274	100

Sequence based PCA Plot of the family - PF08812 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=120 Length=8
Motif2 Start=204 Length=8
Motif3 Start=110 Length=8
Motif4 Start=82 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay