3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08807

Details:

PFam ID : PF08807

PFam Domain Description : Bacterial domain of unknown function (DUF1798)

Number of Sequence in 50% Dataset : 22

Number of Sequence in Full Dataset : 42

Average sequence length: 107.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08807	B4AKN3_BACPU_9_122	42.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08807	B4AKN3_BACPU_9_122	100

Sequence based PCA Plot of the family - PF08807 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=29 Length=21

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay