3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08802

Details:

PFam ID : PF08802

PFam Domain Description : Cytochrome B6-F complex Fe-S subunit

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 84

Average sequence length: 37.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08802	D7TD44_VITVI_76_246	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08802	B5INP0_9CHRO_1_28	100

Sequence based PCA Plot of the family - PF08802 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay