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3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08801
Details:

PFam ID : PF08801

PFam Domain Description : Nup133 N terminal like

Number of Sequence in 50% Dataset : 118

Number of Sequence in Full Dataset : 264

Average sequence length: 392.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF08801D7TD44_VITVI_76_24695.7
HMMER Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF08801Q5KC92_CRYNE_57_28699.2
Sequence based PCA Plot of the family - PF08801 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=360 Length=8
Motif4 Start=390 Length=8
Download PSSM/HMM Models/Alignment:
Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay