3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08800

Details:

PFam ID : PF08800

PFam Domain Description : VirE N-terminal domain

Number of Sequence in 50% Dataset : 56

Number of Sequence in Full Dataset : 164

Average sequence length: 128.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08800	B7BC91_9PORP_1_65	85.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08800	C3QV26_9BACE_51_194	100

Sequence based PCA Plot of the family - PF08800 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay