3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08799

Details:

PFam ID : PF08799

PFam Domain Description : pre-mRNA processing factor 4 (PRP4) like

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 193

Average sequence length: 29.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08799	A4RQ08_MAGO7_149_175	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08799	A4RQ08_MAGO7_149_175	98.9

Sequence based PCA Plot of the family - PF08799 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=10 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay