3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08798

Details:

PFam ID : PF08798

PFam Domain Description : CRISPR associated protein

Number of Sequence in 50% Dataset : 103

Number of Sequence in Full Dataset : 209

Average sequence length: 209.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08798	A8ZZ18_DESOH_1_272	99.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08798	A8ZZ18_DESOH_1_272	100

Sequence based PCA Plot of the family - PF08798 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=239 Length=8
Motif3 Start=13 Length=8
Motif4 Start=255 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay