3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08792

Details:

PFam ID : PF08792

PFam Domain Description : A2L zinc ribbon domain

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 28

Average sequence length: 31.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08792	D6Z716_DESAT_18_44	45.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08792	VLTF3_FOWPN_2_33	40

Sequence based PCA Plot of the family - PF08792 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay