3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08790

Details:

PFam ID : PF08790

PFam Domain Description : LYAR-type C2HC zinc finger

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 115

Average sequence length: 27.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08790	A5GRF0_SYNR3_69_92	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08790	C5GCI0_AJEDR_30_49	100

Sequence based PCA Plot of the family - PF08790 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=12 Length=8
Motif2 Start=3 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay