3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08787

Details:

PFam ID : PF08787

PFam Domain Description : Alginate lyase

Number of Sequence in 50% Dataset : 58

Number of Sequence in Full Dataset : 192

Average sequence length: 224.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08787	A0Y119_9GAMM_53_289	96.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08787	D7C663_STRBB_37_214	98.9

Sequence based PCA Plot of the family - PF08787 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=2 Length=11
Motif2 Start=88 Length=8
Motif3 Start=50 Length=8
Motif4 Start=215 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay