3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08783

Details:

PFam ID : PF08783

PFam Domain Description : DWNN domain

Number of Sequence in 50% Dataset : 22

Number of Sequence in Full Dataset : 116

Average sequence length: 72.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08783	Q10LV6_ORYSJ_3_44	28.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08783	B9SY36_RICCO_3_86	100

Sequence based PCA Plot of the family - PF08783 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=67 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay