3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08782 Details: PFam ID : PF08782 PFam Domain Description : c-SKI Smad4 binding domain Number of Sequence in 50% Dataset : 8 Number of Sequence in Full Dataset : 58 Average sequence length: 86.9 Pairwise Identity of Sequence in 50% Dataset : 31.3 FASSM Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF08782C4PXE3_SCHMA_378_47071.4 HMMER Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF08782Q4T2Q2_TETNG_145_228100 Sequence based PCA Plot of the family - PF08782 : BRP of Green color is by FASSM and of Red color is by HMMER PSIMOT-Motifs Extracted using PSIMOT:There are 3 motifsMotif1 Start=23 Length=26Motif2 Start=14 Length=8Motif3 Start=5 Length=8 Download PSSM/HMM Models/Alignment:Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay
PFam ID : PF08782
PFam Domain Description : c-SKI Smad4 binding domain
Number of Sequence in 50% Dataset : 8
Number of Sequence in Full Dataset : 58
Average sequence length: 86.9
Pairwise Identity of Sequence in 50% Dataset : 31.3
BRP of Green color is by FASSM and of Red color is by HMMER