3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08780

Details:

PFam ID : PF08780

PFam Domain Description : Nucleotidyltransferase substrate binding protein like

Number of Sequence in 50% Dataset : 73

Number of Sequence in Full Dataset : 226

Average sequence length: 118.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08780	E2NYB5_PASHA_11_146	91.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08780	E2NYB5_PASHA_11_146	99.5

Sequence based PCA Plot of the family - PF08780 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=82 Length=8
Motif4 Start=96 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay