3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08778

Details:

PFam ID : PF08778

PFam Domain Description : HIF-1 alpha C terminal transactivation domain

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 40

Average sequence length: 37.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08778	B8BSR2_THAPS_311_431	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08778	A2D587_HYLKL_61_90	97.4

Sequence based PCA Plot of the family - PF08778 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay