3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08776

Details:

PFam ID : PF08776

PFam Domain Description : VASP tetramerisation domain

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 35

Average sequence length: 37

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08776	D0Z543_LISDA_196_317	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08776	F1L4E1_ASCSU_451_482	97.0

Sequence based PCA Plot of the family - PF08776 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay