3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08773

Details:

PFam ID : PF08773

PFam Domain Description : Cathepsin C exclusion domain

Number of Sequence in 50% Dataset : 32

Number of Sequence in Full Dataset : 78

Average sequence length: 101.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08773	C5KYC0_9ALVE_23_111	96.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08773	D2VLU6_NAEGR_27_175	98.7

Sequence based PCA Plot of the family - PF08773 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=54 Length=8
Motif4 Start=38 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay