3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08772

Details:

PFam ID : PF08772

PFam Domain Description : Nin one binding (NOB1) Zn-ribbon like

Number of Sequence in 50% Dataset : 18

Number of Sequence in Full Dataset : 121

Average sequence length: 72.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08772	B7FP62_PHATC_527_607	94.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08772	B7FP62_PHATC_527_607	100

Sequence based PCA Plot of the family - PF08772 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=69 Length=11
Motif2 Start=8 Length=18
Motif3 Start=31 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay