3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08768

Details:

PFam ID : PF08768

PFam Domain Description : Domain of unknown function (DUF1794)

Number of Sequence in 50% Dataset : 44

Number of Sequence in Full Dataset : 246

Average sequence length: 162.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08768	D5Y1E2_MYCTU_63_159	88.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08768	Q1QIB3_NITHX_9_191	100

Sequence based PCA Plot of the family - PF08768 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=33 Length=8
Motif2 Start=24 Length=8
Motif3 Start=1 Length=8
Motif4 Start=15 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay