3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08767

Details:

PFam ID : PF08767

PFam Domain Description : CRM1 C terminal

Number of Sequence in 50% Dataset : 68

Number of Sequence in Full Dataset : 167

Average sequence length: 269.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08767	B8BYG7_THAPS_1379_1565	55.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08767	A7AUR1_BABBO_765_1142	100

Sequence based PCA Plot of the family - PF08767 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=135 Length=8
Motif2 Start=45 Length=8
Motif3 Start=5 Length=8
Motif4 Start=291 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay