3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08766

Details:

PFam ID : PF08766

PFam Domain Description : DEK C terminal domain

Number of Sequence in 50% Dataset : 75

Number of Sequence in Full Dataset : 306

Average sequence length: 53.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08766	B8C4F8_THAPS_199_251	22.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08766	Q5KNU4_CRYNE_1215_1269	99.6

Sequence based PCA Plot of the family - PF08766 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=23 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay