3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08765

Details:

PFam ID : PF08765

PFam Domain Description : Mor transcription activator family

Number of Sequence in 50% Dataset : 117

Number of Sequence in Full Dataset : 248

Average sequence length: 94.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08765	A4NLR5_HAEIF_14_77	81.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08765	B7UXL7_PSEA8_17_147	100

Sequence based PCA Plot of the family - PF08765 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=18 Length=17
Motif2 Start=1 Length=8
Motif3 Start=51 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay