3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08762

Details:

PFam ID : PF08762

PFam Domain Description : CRPV capsid protein like

Number of Sequence in 50% Dataset : 28

Number of Sequence in Full Dataset : 38

Average sequence length: 182.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08762	A1X596_9VIRU_36_176	96.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08762	B9A8E1_9VIRU_651_894	100

Sequence based PCA Plot of the family - PF08762 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=27 Length=8
Motif2 Start=1 Length=8
Motif3 Start=15 Length=11
Motif4 Start=85 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay