3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08755

Details:

PFam ID : PF08755

PFam Domain Description : Hemimethylated DNA-binding protein YccV like

Number of Sequence in 50% Dataset : 47

Number of Sequence in Full Dataset : 256

Average sequence length: 97.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08755	E2AQ61_9HYME_44_174	84.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08755	B6AI52_CRYMR_606_731	100

Sequence based PCA Plot of the family - PF08755 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=3 Length=18
Motif2 Start=58 Length=8
Motif3 Start=41 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay