3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08753

Details:

PFam ID : PF08753

PFam Domain Description : NikR C terminal nickel binding domain

Number of Sequence in 50% Dataset : 44

Number of Sequence in Full Dataset : 277

Average sequence length: 77.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08753	D2RV27_HALTV_54_95	30.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08753	A3PPB2_RHOS1_53_131	100

Sequence based PCA Plot of the family - PF08753 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=11
Motif2 Start=67 Length=8
Motif3 Start=19 Length=8
Motif4 Start=1 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay