3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08752

Details:

PFam ID : PF08752

PFam Domain Description : Coatomer gamma subunit appendage domain

Number of Sequence in 50% Dataset : 40

Number of Sequence in Full Dataset : 154

Average sequence length: 252.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08752	A2GI41_TRIVA_24_282	30.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08752	D8M0W8_BLAHO_537_808	100

Sequence based PCA Plot of the family - PF08752 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=49 Length=8
Motif2 Start=71 Length=8
Motif3 Start=36 Length=8
Motif4 Start=129 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay