3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08751

Details:

PFam ID : PF08751

PFam Domain Description : TrwC relaxase

Number of Sequence in 50% Dataset : 142

Number of Sequence in Full Dataset : 286

Average sequence length: 294.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08751	D3MNP4_PROAC_1_48	90.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08751	D8UN63_9MICC_5_524	100

Sequence based PCA Plot of the family - PF08751 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=29 Length=8
Motif2 Start=20 Length=8
Motif3 Start=79 Length=8
Motif4 Start=2 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay