3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08750

Details:

PFam ID : PF08750

PFam Domain Description : CNP1-like family

Number of Sequence in 50% Dataset : 17

Number of Sequence in Full Dataset : 57

Average sequence length: 140.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08750	D8N6J6_RALSO_40_201	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08750	D8N6J6_RALSO_40_201	100

Sequence based PCA Plot of the family - PF08750 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=28
Motif2 Start=68 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay