3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08747

Details:

PFam ID : PF08747

PFam Domain Description : Domain of unknown function (DUF1788)

Number of Sequence in 50% Dataset : 37

Number of Sequence in Full Dataset : 122

Average sequence length: 123.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08747	C3WED4_FUSMR_1_60	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08747	E4V9F3_BIFBI_74_217	100

Sequence based PCA Plot of the family - PF08747 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=24 Length=8
Motif4 Start=47 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay