3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08743

Details:

PFam ID : PF08743

PFam Domain Description : Nse4

Number of Sequence in 50% Dataset : 98

Number of Sequence in Full Dataset : 193

Average sequence length: 244.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08743	D1JF21_9ARCH_149_260	86.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08743	B7XJ73_ENTBH_104_261	98.4

Sequence based PCA Plot of the family - PF08743 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=284 Length=8
Motif3 Start=267 Length=11
Motif4 Start=46 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay