3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08742

Details:

PFam ID : PF08742

PFam Domain Description : C8 domain

Number of Sequence in 50% Dataset : 130

Number of Sequence in Full Dataset : 571

Average sequence length: 73.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08742	E9HNL4_DAPPU_20_93	99.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08742	F2U0R7_9EUKA_5807_5884	100

Sequence based PCA Plot of the family - PF08742 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=21
Motif2 Start=61 Length=11
Motif3 Start=34 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay